Can I use Qiime2 to analyze my SBanalyzer output?

Yes but you must have a Qiime2 environment, R, and SBanalyzer version 3 installed, and run the ASV Expert User Protocol to produce a ‘.biom’ file and other QIIME-ready files from the ASV results.   After running the Expert User Protocol to generate ASVs, import  your ASV .fasta, .biom, .tax files into QIIME2. The user is required to generate a .tsv file containing relevant sample metadata (time point info, health conditions, treatments, etc). For further information go to https://qiime2.org/

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